HydroShare Publications

This publication list includes all publications written as part of the development of HydroShare, sorted chronologically.

Journal or Book Chapter or Juried Conference Papers

• Hart, J., C. Bandaragoda, and G. Ramirez-Toro (2019), Sharing data helps Puerto Ricans rebound after Hurricane Maria, Eos, 100, <https://doi.org/10.1029/2019EO121651.

• Yin, D., Y. Liu, H. Hu, J. Terstriep, X. Hong, A. Padmanabhan and S. Wang, (2018), "CyberGIS-Jupyter for reproducible and scalable geospatial analytics," Concurrency and Computation: Practice and Experience: e5040, https://doi.org/10.1002/cpe.5040.

• Xue, Z., A. Couch and D. Tarboton, (2018), "Map based discovery of hydrologic data in the HydroShare collaboration environment," Environmental Modelling & Software, 111: 24-33, https://doi.org/10.1016/j.envsoft.2018.09.014.

• Phuong, J., C. Bandaragoda, E. Istanbulluoglu, C. Beveridge, R. Strauch, L. Setiawan and S. D. Mooney, (2019), "Automated retrieval, preprocessing, and visualization of gridded hydrometeorology data products for spatial-temporal exploratory analysis and intercomparison," Environmental Modelling & Software, 116: 119-130, https://doi.org/10.1016/j.envsoft.2019.01.007.

• Bandaragoda, C. J., A. Castronova, E. Istanbulluoglu, R. Strauch, S. S. Nudurupati, J. Phuong, J. M. Adams, N. M. Gasparini, K. Barnhart, E. W. H. Hutton, D. E. J. Hobley, N. J. Lyons, G. E. Tucker, D. G. Tarboton, R. Idaszak and S. Wang, (2019), "Enabling collaborative numerical Modeling in Earth sciences using Knowledge Infrastructure," Environmental Modelling & Software, 120: 104424, https://doi.org/10.1016/j.envsoft.2019.03.020.

• Lyu, F., D. Yin, A. Padmanabhan, Y. Choi, J. L. Goodall, A. Castronova, D. Tarboton and S. Wang, (2019), "Reproducible Hydrological Modeling with CyberGIS-Jupyter: A Case Study on SUMMA," Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (learning), Chicago, IL, USA, ACM, 1-6, https://doi.org/10.1145/3332186.3333052.

• Wilkins-Diehr, N., M. Miller, E. H. Brookes, R. Arora, A. Chourasia, P. Calyam, D. M. Jennewein, V. Nandigam, M. D. LaMar, S. B. Cleveland, G. Newman, S. Wang, I. Zaslavsky, M. A. Cianfrocco, K. Ellett and D. Tarboton, (2019), "Measuring Success: How Science Gateways Define Impact," Gateways 2019, San Diego, CA, https://osf.io/tkzuy/.

• Yi, H., R. Idaszak, M. Stealey, C. Calloway, A. L. Couch and D. G. Tarboton, (2018), "Advancing distributed data management for the HydroShare hydrologic information system," Environmental Modelling & Software, 102: 233-240, https://doi.org/10.1016/j.envsoft.2017.12.008..

• Essawy, B. T., J. L. Goodall, W. Zell, D. Voce, M. M. Morsy, J. Sadler, Z. Yuan and T. Malik, (2018), "Integrating scientific cyberinfrastructures to improve reproducibility in computational hydrology: Example for HydroShare and GeoTrust," Environmental Modelling & Software, 105: 217-229, https://doi.org/10.1016/j.envsoft.2018.03.025.

• Crawley, S., D. Ames, Z. Li and D. Tarboton, (2017), "HydroShare GIS: Visualizing Spatial Data in the Cloud," Open Water Journal, 4(1): 3-20, http://scholarsarchive.byu.edu/openwater/vol4/iss1/2.

• Morsy, M. M., J. L. Goodall, A. M. Castronova, P. Dash, V. Merwade, J. M. Sadler, M. A. Rajib, J. S. Horsburgh and D. G. Tarboton, (2017), "Design of a metadata framework for environmental models with an example hydrologic application in HydroShare," Environmental Modelling & Software, 93: 13-28, http://dx.doi.org/10.1016/j.envsoft.2017.02.028.

• Idaszak, R., S. Ahalt, K. Bradford, C. Calloway, C. Castillo, J. Coposky, J. Crabtree, S. Davis, Y. Guo, F. Jiang, A. Krishnamurthy, H. Lander, W. C. Lenhardt, A. Rajasekar, K. Robasky, T. Russell, E. Scott, D. Sizemore, M. Stealey, H. Xu, H. Yi and W. Zhang, (2017), "xDCI - Accelerating Data Cyberinfrastructure and Research for Community Science Gateways," Gateways 2017, University of Michigan, Ann Arbor, MI, October 23-25, https://doi.org/10.6084/m9.figshare.5483701.v1.

• Idaszak, R., D. G. Tarboton, H. Yi, L. Christopherson, M. J. Stealey, B. Miles, P. Dash, A. Couch, C. Spealman, D. P. Ames and J. S. Horsburgh, (2017), "HydroShare - A case study of the application of modern software engineering to a large distributed federally-funded scientific software development project," Chapter 10 in Software Engineering for Science, Edited by J. Carver, N. P. C. Hong and G. K. Thiruvathukal, Taylor&Francis CRC Press, p.219-233.

• Goodall, J. L., V. Merwade, I. Zaslavsky, D. G. Tarboton, J. S. Horsburgh, D. P. Ames and A. Couch, (2016), "Hydrologic Information Systems. ," Chapter 7 in Handbook of Applied Hydrology, Edited by V. P. Singh, McGraw Hill, p.7-1 to 7-9.

• Swain, N. R., S. D. Christensen, A. D. Snow, H. Dolder, G. Espinoza-Dávalos, E. Goharian, N. L. Jones, E. J. Nelson, D. P. Ames and S. J. Burian, (2016), "A new open source platform for lowering the barrier for environmental web app development," Environmental Modelling & Software, 85: 11-26, http://dx.doi.org/10.1016/j.envsoft.2016.08.003.

• Horsburgh, J. S., M. M. Morsy, A. M. Castronova, J. L. Goodall, T. Gan, H. Yi, M. J. Stealey and D. G. Tarboton, (2016), "HydroShare: Sharing Diverse Environmental Data Types and Models as Social Objects with Application to the Hydrology Domain," JAWRA Journal of the American Water Resources Association, 52(4): 873-889, http://dx.doi.org/10.1111/1752-1688.12363.

• Kadlec, J., A. W. Miller and D. P. Ames, (2016), "Extracting Snow Cover Time Series Data from Open Access Web Mapping Tile Services," JAWRA Journal of the American Water Resources Association, 52(4): 916-932, http://dx.doi.org/10.1111/1752-1688.12387.

• Kadlec, J., StClair, B., Ames, D.P., Gill, R., 2015. WaterML R Package for Managing Ecological Experiment Data on a CUAHSI HydroServer. Ecological Informatics, 28, pp. 19-28 http://dx.doi.org/10.1016/j.ecoinf.2015.05.002.

• Sadler, J., Ames, D.P., Livingston, S.J., 2016. Extending HydroShare to enable hydrologic time series data as social media. J. Hydroinformatics, 18(2), pp. 198-209. http://dx.doi.org/10.2166/hydro.2015.331.

• Sadler, J., Ames, D.P., Khattar, R., 2016. A Recipe for Standards-Based Data Sharing using Open Source Software and Low-Cost Electronics. J. Hydroinformatics, 18(2), pp. 185-197. http://dx.doi.org/10.2166/hydro.2015.092.

• Rajib M. A., V. Merwade, I Luk Kim, L. Zhao, C. X. Song and S. Zhe (2016), SWATShare – A web platform for collaborative research and education through online sharing, simulation and visualization of SWAT models, Environmental Modelling and Software, 75, 498-512. doi:10.1016/j.envsoft.2015.10.032

• Miles, B. and L. Band, (2015), "Ecohydrology Models without Borders?," 31 in Environmental Software Systems. Infrastructures, Services and Applications, Edited by R. Denzer, R. Argent, G. Schimak and J. Hřebíček, 448, IFIP Advances in Information and Communication Technology, Springer International Publishing, p.311-320, http://dx.doi.org/10.1007/978-3-319-15994-2_31.

• Swain, N. R., K. Latu, S. D. Christensen, N. L. Jones, E. J. Nelson, D. P. Ames and G. P. Williams, (2015), "A review of open source software solutions for developing water resources web applications," Environmental Modelling & Software, 67: 108-117, http://dx.doi.org/10.1016/j.envsoft.2015.01.014.

• Couch, A., D. Tarboton, R. Idaszak, J. Horsburgh, H. Yi and M. Stealey, (2015), "A Flexible File Sharing Mechanism for iRODS," iRODS User Group Meeting, Chapel Hill, iRODS Consortium, 61-68, http://irods.org/wp-content/uploads/2015/09/UMG2015_P.pdf. [Video]

• Tarboton, D. G., R. Idaszak, J. S. Horsburgh, J. Heard, D. Ames, J. L. Goodall, L. E. Band, V. Merwade, A. Couch, J. Arrigo, R. Hooper, D. Valentine and D. Maidment, (2014), "A Resource Centric Approach for Advancing Collaboration Through Hydrologic Data and Model Sharing," 11th International Conference on Hydroinformatics, HIC 2014, New York City, USA, Paper 314, http://academicworks.cuny.edu/cc_conf_hic/314/.

• Heard, J., D. Tarboton, R. Idaszak, J. Horsburgh, D. Ames, A. Bedig, A. M. Castronova, A. Couch, P. Dash, C. Frisby, T. Gan, J. Goodall, S. Jackson, S. Livingston, D. Maidment, N. Martin, B. Miles, S. Mills, J. Sadler, D. Valentine and L. Zhao, (2014), "An Architectural Overview of Hydroshare, A Next-Generation Hydrologic Information System," 11th International Conference on Hydroinformatics, HIC 2014, New York City, USA, Paper 311, http://academicworks.cuny.edu/cc_conf_hic/311/.

• Rajib, M. A., V. Merwade, I. L. Kim, S. Zhe, L. Zhao and C. Song, (2014), "SWATShare – A Web-Portal For Hydrology Research And Education Using Soil Water And Assessment Tool," 11th International Conference on Hydroinformatics, New York City, USA, Paper 463, http://academicworks.cuny.edu/cc_conf_hic/463.

• Frisby, C., D. P. Ames and N. Martin, (2014), "Client-Server Hydrologic Data Exchange – Making the (Use) Case for Desktop Applications," in D. P. Ames, N. W. T. Quinn and A. E. Rizzoli (eds), Proceedings of the 7th International Congress on Environmental Modelling and Software, June 15-19, 2014, San Diego, California, USA, International Environmental Modelling and Software Society (iEMSs), ISBN: 978-88-9035-744-2, http://www.iemss.org/sites/iemss2014/papers/iemss2014_submission_316.pdf.

• Tarboton, D. G., R. Idaszak, J. S. Horsburgh, J. Heard, D. Ames, J. L. Goodall, L. Band, V. Merwade, A. Couch, J. Arrigo, R. Hooper, D. Valentine and D. Maidment, (2014), "HydroShare: Advancing Collaboration through Hydrologic Data and Model Sharing," in D. P. Ames, N. W. T. Quinn and A. E. Rizzoli (eds), Proceedings of the 7th International Congress on Environmental Modelling and Software, San Diego, California, USA, International Environmental Modelling and Software Society (iEMSs), ISBN: 978-88-9035-744-2, http://www.iemss.org/sites/iemss2014/papers/iemss2014_submission_243.pdf.

• Morsy, M. M., J. L. Goodall, C. Bandaragoda, A. M. Castronova and J. Greenberg, (2014), "Metadata for Describing Water Models," in D. P. Ames, N. W. T. Quinn and A. E. Rizzoli (eds), Proceedings of the 7th International Congress on Environmental Modelling and Software, San Diego, California, USA, June 15-19, 2014, International Environmental Modelling and Software Society (iEMSs), ISBN: 978-88-9035-744-2, http://www.iemss.org/sites/iemss2014/papers/iemss2014_submission_259.pdf.

• Merwade, V., C. Song, L. Zhao. S. Zhe and M. A. Rajib, SWATShare – A portal for sharing, publishing, and running SWAT models using XSEDE resources, Proceedings of the 2013 SWAT Users Conference and Workshops, July 2013, Toulouse, France. http://swat.tamu.edu/media/114650/2013-swat-conference-proceedings-secured.pdf

Other Conference Presentations / Papers

• Bandaragoda, C. (2019), HydroShare: a tool to build resilience. 13th CECIA-IAUPR Biennial Symposium on Potable Water Issues in Puerto Rico: Extreme weather droughts and hurricanes; what needs to change. Bayamón, Puerto Rico, February 14, 2019.

• Bandargoda, C. (2019), Operational data provenance for anticipatory disaster planning, Plenary Talk at Earth Systems Information Partners (ESIP) Winter Meeting, Bethesda, MD. January 15, 2019. Session Recording: https://esip.sharefile.com/d-s624bb0e90794c779

• Bandaragoda, C. and Scientific Team: Building Digital Infrastructure and Communities to Assess Risk of Drinking Water Hazards Team (2018), Building Digital Infrastructure and Communities to Assess Risk of Drinking Water Hazards Caused by Hurricanes Maria and Florence, Poster NH21D-3540 at American Geophysical Union Fall Meeting, Washington, DC, 10-14 Dec, https://agu.confex.com/agu/fm18/meetingapp.cgi/Paper/476513

• Bandaragoda, C. and Scientific Team: Collaborative RAPID Building Infrastructure to Prevent Disasters like Hurricane Maria Team (2018), Almost like Maria: A hurricane of science, Poster ED51D-0687 at American Geophysical Union Fall Meeting, Washington, DC, 10-14 Dec, https://agu.confex.com/agu/fm18/meetingapp.cgi/Paper/442211

• Phuong, J., C. Bandaragoda, L. Setiawan, C. Beveridge, R. L. Strauch, S. Siddhartha Nudurupati, S. Mooney and E. Istanbulluoglu (2018), Observatory for Gridded Hydrometeorology (OGH): a python toolkit to automate access and analysis with gridded data products, Presentation NS53A-0553 at American Geophysical Union Fall Meeting, Washington, DC, 10-14 Dec, https://agu.confex.com/agu/fm18/meetingapp.cgi/Paper/456145

• Phuong, J., A. Hartzler, K. Stephens, S. Mooney and C. Bandaragoda (2018), Geospatial information needs and use-cases for population health researchers in hurricane and flood preparedness scenarios. Poster at GH31C-1233 at American Geophysical Union Fall Meeting, Washington, DC, 10-14 Dec, https://agu.confex.com/agu/fm18/meetingapp.cgi/Paper/439454

• Bandaragoda, C., M. Leon, W.C. Lenhardt, J. Phuong, J.S. Horsburgh, A.S. Jones and Scientific Team: Collaborative RAPID Building Infrastructure to Prevent Disasters like Hurricane Maria Team (2018), Operational data provenance and cybersecurity for anticipatory disaster planning, Poster at IN51C-0594 at American Geophysical Union Fall Meeting, Washington, DC, 10-14 Dec, https://agu.confex.com/agu/fm18/meetingapp.cgi/Paper/442443

• Sadler, J.M., Goodall, J.L., Morsy, M.M., Horsburgh, J.S., Dash, P.K., and Tarboton, D.G., (2019), User-defined metadata schemas for hydrological models, CUAHSI Conference on Hydroinformatics, Provo, Utah, 29-31 Jul.

• Choi, Y.D., Sadler, J.M., Castronova, A.M., Goodall, J.L., Bennett, A., Nijssen, B., Idaszak, R. Wang, S., Clark, M.P, and Tarboton, D.G., (2019), Design and Implementation of Cyberinfrastructure to Support a Cloud-Based, Community Hydrologic Modeling Ecosystem, CUAHSI Conference on Hydroinformatics, Provo, Utah, 29-31 Jul.

• Malik, T., Z. Yuan, B. T. Essawy, A. M. Castronova, T. Gan, D. G. Tarboton, J. L. Goodall, S. D. Peckham, E. Choi, A. Bhatt, (2018), "Sciunits: Reusable Research Objects," Paper IN34B-10 presented at American Geophysical Union Fall Meeting, Washington, DC, 10-14 Dec, https://agu.confex.com/agu/fm18/meetingapp.cgi/Paper/404729.

• Sadler, J. M., B. T. Essawy, J. L. Goodall, D. G. Tarboton, (2018), "Illustrating Hydroshare’s Functionality for Supporting FAIR Data Principles through an Example Use Case and Reproducibility Workshop," Paper ED53C-14 presented at American Geophysical Union Fall Meeting, Washington, DC, 10-14 Dec, https://agu.confex.com/agu/fm18/meetingapp.cgi/Paper/397302.

• Tarboton, D. G., R. Idaszak, J. S. Horsburgh, D. Ames, J. L. Goodall, A. Couch, P. Dash, H. Yi, C. Bandaragoda, A. Castronova, M. Clark, R. Hooper, S. Wang, M. Ramirez, J. Sadler, M. Morsy, S. Black, D. Yin, T. Malik, L. Brazil, (2019), "HydroShare: An overview of new functionality developed in support of collaborative reproducible research," 2019 CUAHSI Hydroinformatics Conference, Brigham Young University, Provo, Utah, July 29-31, https://www.cuahsi.org/community/cuahsi-science-meetings/, https://www.hydroshare.org/resource/76c0b3a5d7d54c16b80306f950432a19/.

• Tarboton, D. G., T. Malik, J. Goodall, A. M. Castronova, T. Gan, (2019), "Hydrologic Science in Action: Integration of Reproducible Methods into Community Cyberinfrastructure," EarthCube Annual Meeting, Denver, Colorado, June 14, https://www.conftool.org/earthcube2019/index.php?page=browseSessions&form_session=11, https://doi.org/10.4211/hs.84c5d397abd1441a9764fdf071fbe6d2.

• Tarboton, D. G., R. Idaszak, J. S. Horsburgh, D. P. Ames, J. L. Goodall, A. Couch, P. K. Dash, H. Yi, C. Bandaragoda, A. M. Castronova, M. P. Clark, S. Wang, The HydroShare Development Team, (2018), "HydroShare tools and recommended practices for sharing and publishing data and models in support of collaborative reproducible research," Poster IN53E-0656 presented at American Geophysical Union Fall Meeting, Washington, DC, 10-14 Dec, https://agu.confex.com/agu/fm18/meetingapp.cgi/Paper/424998.

• Choi, Y., J. M. Sadler, A. M. Castronova, J. L. Goodall, A. Bennett, B. Nijssen, R. Idaszak, S. Wang, M. P. Clark, D. G. Tarboton, (2018), "The Development of Sharable pySUMMA Simulation Environment using Singularity on HydroShare," Paper ED53C-16 presented at American Geophysical Union Fall Meeting, Washington, DC, 10-14 Dec, https://agu.confex.com/agu/fm18/meetingapp.cgi/Paper/428389.

• Bales, J.D., and Castronova, A. (2018) CUAHSI Community and Water Data Services, Presented to U.S. EPA Atlantic Ecology Division, Narragansett, RI, 9 October.

• Bales, J.D., and Castronova, A. (2018) Consortium of Universities for the Advancement of Hydrologic Science, Presented at the Geological Society of America Pardee Symposium, Indianapolis, IN, 4 November.

• Bales, J.D. (2019) CUAHSI Community and Water Data Services, Presented to U.S. EPA Clean Water Act - Superfund Collaboration Meeting, by conference call, 16 April.

• Bales, J.D. (2019) The IoW, CUAHSI Community, and Water Data, Presented at the California Water Board Data Science Symposium, Sacramento, CA, 1 July.

• Bales, J.D., Arctur, D., and Tarboton, D. (2019) A Comprehensive, Publicly Available Archive for Improving Forecasts of Extreme Floods: Hurricane Harvey, Presented at the 27th IUGG Symposium, International Association of Hydrologic Science Symposia, Montreal, CA 11-12 July (poster).

• Bales, J.D. (2019) Water-Level Monitoring for Everyone: Providing Data that are Findable, Accessible, Interoperable and Reusable, Presented at the 27th IUGG Symposium, International Association of Hydrologic Science Symposia, Montreal, CA, 12 July.

• Bales, J.D. and Beighley, E. (2019) Connecting the Water-Science Community to SWOT, Presented by Beighley at the 2nd SWOT Early Adopters Training Workshop, Paris, France, 20-21 May.

• Bales, J.D. and Gomez-Velez, J. (2019) CUAHSI, Presented by Gomez-Velez at the DOE WHONDERS (Worldwide Hydrobiogeochemical Observation Network for Dynamic River Systems) Workshop, Washington, DC, 28-29 January.

• Shaowen Wang. “Frontiers in CyberGIS and Geospatial Data Science”. AAG-UCGIS Summer School on Reproducible Problem Solving with CyberGIS and Geospatial Data Science, Urbana, Illinois, USA, July 8, 2019

• Shaowen Wang. “CyberGIS and Machine Intelligence for Transforming Geospatial Discovery and Innovation”.Keynote Address at the EarthCube 2019 Annual Meeting, Denver, Colorado, USA, June 13, 2019

• Shaowen Wang. “Geospatial Discovery and Innovation in the Era of CyberGIS and Machine Intelligence”. Gerard Rushton Fellowship Lecture, Department of Geographical and Sustainability Sciences, the University of Iowa, Iowa City, Iowa, USA, March 29, 2019 Shaowen Wang. “Exploring the Frontiers of CyberGIS and Geospatial Data Science”. Distinguished Lecture in Geospatial Data Science, University of Delaware, Newark, Delaware, USA, March 15, 2019

• Shaowen Wang. “Next Generation GIS – A CyberGIS Perspective”. Center for Geographic Analysis, Harvard University, Boston, Massachusetts, USA, October 11, 2018