Pabitra Dash

USU

 Recent Activity

ABSTRACT:

This resource contains the following bash scripts which can be used by the user in any of the JupterHub instances accessible via the "Open with" functionality of HydroShare to create conda environment to run AORC related notebooks.

- setup_aorc_conda_env_cuahsi_jh.sh (This script should be used in CUAHSI JupyterHub to create a new conda environment called 'aorc')
- setup_aorc_conda_env_cybergis_jh.sh (This script should be used in CyberGIS Jupyter for Water) to create a new conda environment called 'aorc')
- environment.yml (This file contains the python modules needed to run the AORC notebooks - similar to requirements.txt file used with pip install). The above script files use this file to install the python modules specified in this yml file.
- delete_aorc_conda_env_cuahsi_jh,sh (This script can be run to delete the conda env 'aorc' in CUAHSI JupyterHub)
- delete_aorc_conda_env_cybergis_jh,sh (This script can be run to delete the conda env 'aorc' in CyberGIS Jupyter for Water)

How to update the aorc conda environment after it has been created?
Update here means installing additional python modules or upgrading to a newer version of any modules that is already installed in the aorc conda environment.
- Update the environment.yml file by adding new modules or updating the version of any modules in that file.
- In the JupyterHub instance, use a terminal and run the following 2 commands:
- conda activate aorc
- mamba env update -f environment.yml

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ABSTRACT:

This resource contains updated (code re-organization and cleanup) of Ayman's notebooks from the following 3 resources.

- AORC Notebook https://www.hydroshare.org/resource/72ea9726187e43d7b50a624f2acf591f/
- NWM retrospective data retrieval https://www.hydroshare.org/resource/6ca065138d764339baf3514ba2f2d72f/
- HydroFabric subsetter and retrieval https://www.hydroshare.org/resource/631be88704ef4167b12e9ad9d2529ba9/

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ABSTRACT:

This netCDF data is the simulation output from Utah Energy Balance (UEB) model.It includes the simulation result of snow water equivalent during the period Oct. 2009 to June 2010 for TWDEF site in Utah.

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ABSTRACT:

IGUIDE register HS resource testing

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ABSTRACT:

IGUIDE registration testing

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 Author Identifiers

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Resource Resource
Composite Resource Type Design
Created: April 22, 2016, 10:17 p.m.
Authors: Tian Gan

ABSTRACT:

This includes the basic design idea of the composite resource type for discussion

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Resource Resource

ABSTRACT:

The HydroDS tasks required to be executed to get complete UEB model inputs for an example watershed are given in the Python file “HydroDS_UEB_Setup”. This file calls functions from the other file, "hydrods_python_client" that has declarations for data service functions available from HydroDS.

To run the workflow for a different watershed in the Western US, modify the coordinates of the watershed boundary, outlet location, the start and end time of model period, and the spatial reference (projection) information in the form of EPSG Code (http://spatialreference.org/ref/epsg/). The commands in the workflow script can also be called interactively from any Python command line, or from a user application that uses incorporates the Python Client Library.

For watersheds outside of the Western US, but in the CONUS, you need to upload your own DEM. The services are currently limited to the US.
You need to have a HydroDS account to use these services.

These scripts are for the following paper
Gichamo, T. Z., N. S. Sazib, D. G. Tarboton and P. Dash, (2020), "HydroDS: Data Services in Support of Physically Based, Distributed Hydrological Models," Environmental Modelling & Software, https://doi.org/10.1016/j.envsoft.2020.104623.

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Resource Resource
NetCDF Coverage Issues
Created: May 4, 2022, 3:35 p.m.
Authors: Dash, Pabitra · Tseganeh Z. Gichamo · Jamy

ABSTRACT:

This is the model simulation of snow water equivalent in Logan River watershed from 2008 to 2009. The model used is the Utah Energy Balance model which is a snowmelt model. The simulation result is used as the input data for SAC-SMA model to simulate the stream flow of the watershed.

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Resource Resource
IGUIDE Resource Registration-1-updated
Created: June 28, 2023, 6:49 p.m.
Authors: Dash, Pabitra · Jamy

ABSTRACT:

This is a resource to test registration of metadata in iguide catalog.

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Resource Resource
mf2k
Created: June 30, 2023, 4:49 p.m.
Authors: Jeff Sadler

ABSTRACT:

Testing timeout error with file list endpoint.

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Resource Resource
IGUIDE Resource Registration-1
Created: Aug. 9, 2023, 10:17 p.m.
Authors: Dash, Pabitra

ABSTRACT:

IGUIDE registration testing

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Resource Resource
IGUIDE Resource Registration-2-updated
Created: Aug. 9, 2023, 9:21 p.m.
Authors: Dash, Pabitra

ABSTRACT:

IGUIDE register HS resource testing

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Resource Resource
Example Aggregation Metadata in Schema Org Format
Created: March 27, 2024, 2:39 a.m.
Authors: Dash, Pabitra · Jamy

ABSTRACT:

This netCDF data is the simulation output from Utah Energy Balance (UEB) model.It includes the simulation result of snow water equivalent during the period Oct. 2009 to June 2010 for TWDEF site in Utah.

Show More
Resource Resource
Ayman's Updated Notebooks
Created: Sept. 12, 2024, 2:18 p.m.
Authors: Dash, Pabitra

ABSTRACT:

This resource contains updated (code re-organization and cleanup) of Ayman's notebooks from the following 3 resources.

- AORC Notebook https://www.hydroshare.org/resource/72ea9726187e43d7b50a624f2acf591f/
- NWM retrospective data retrieval https://www.hydroshare.org/resource/6ca065138d764339baf3514ba2f2d72f/
- HydroFabric subsetter and retrieval https://www.hydroshare.org/resource/631be88704ef4167b12e9ad9d2529ba9/

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Resource Resource
Scripts to Create Conda Environments in JupyterHub
Created: May 30, 2025, 1:58 p.m.
Authors: Dash, Pabitra

ABSTRACT:

This resource contains the following bash scripts which can be used by the user in any of the JupterHub instances accessible via the "Open with" functionality of HydroShare to create conda environment to run AORC related notebooks.

- setup_aorc_conda_env_cuahsi_jh.sh (This script should be used in CUAHSI JupyterHub to create a new conda environment called 'aorc')
- setup_aorc_conda_env_cybergis_jh.sh (This script should be used in CyberGIS Jupyter for Water) to create a new conda environment called 'aorc')
- environment.yml (This file contains the python modules needed to run the AORC notebooks - similar to requirements.txt file used with pip install). The above script files use this file to install the python modules specified in this yml file.
- delete_aorc_conda_env_cuahsi_jh,sh (This script can be run to delete the conda env 'aorc' in CUAHSI JupyterHub)
- delete_aorc_conda_env_cybergis_jh,sh (This script can be run to delete the conda env 'aorc' in CyberGIS Jupyter for Water)

How to update the aorc conda environment after it has been created?
Update here means installing additional python modules or upgrading to a newer version of any modules that is already installed in the aorc conda environment.
- Update the environment.yml file by adding new modules or updating the version of any modules in that file.
- In the JupyterHub instance, use a terminal and run the following 2 commands:
- conda activate aorc
- mamba env update -f environment.yml

Show More